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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ejz SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ejz SAHDiphthine synthase / 1.085
2pb4 SAHDiphthine synthase / 0.895
2dv5 SAHDiphthine synthase / 0.889
2ejk SAHDiphthine synthase / 0.886
2e17 SAHDiphthine synthase / 0.879
2p5c SAHDiphthine synthase / 0.876
2dsi SAHDiphthine synthase / 0.875
2emu SAHDiphthine synthase / 0.873
2dsh SAHDiphthine synthase / 0.871
2dsg SAHDiphthine synthase / 0.867
2e16 SAHDiphthine synthase / 0.864
2owv SAHDiphthine synthase / 0.857
2e15 SAHDiphthine synthase / 0.855
2e8r SAHDiphthine synthase / 0.852
2el0 SAHDiphthine synthase / 0.852
2dv3 SAHDiphthine synthase / 0.848
2e08 SAHDiphthine synthase / 0.848
2ed5 SAHDiphthine synthase / 0.846
2egs SAHDiphthine synthase / 0.845
2p6k SAHDiphthine synthase / 0.843
2pb5 SAHDiphthine synthase / 0.842
2e7r SAHDiphthine synthase / 0.835
2eka SAHDiphthine synthase / 0.832
2pci SAHDiphthine synthase / 0.832
2eh2 SAHDiphthine synthase / 0.830
2ek4 SAHDiphthine synthase / 0.829
2ek7 SAHDiphthine synthase / 0.828
2pck SAHDiphthine synthase / 0.826
2dv7 SAHDiphthine synthase / 0.823
2dxx SAHDiphthine synthase / 0.821
2eh5 SAHDiphthine synthase / 0.821
2e07 SAHDiphthine synthase / 0.819
2huv SAHDiphthine synthase / 0.817
2z6r SAHDiphthine synthase / 0.815
2dek SAHDiphthine synthase / 0.805
2p6d SAHDiphthine synthase / 0.804
2e4n SAHDiphthine synthase / 0.803
2eni SAHDiphthine synthase / 0.802
2hut SAHDiphthine synthase / 0.802
2owf SAHDiphthine synthase / 0.801
2p6l SAHDiphthine synthase / 0.799
2pb6 SAHDiphthine synthase / 0.799
2ek2 SAHDiphthine synthase / 0.798
2el3 SAHDiphthine synthase / 0.791
2p2x SAHDiphthine synthase / 0.788
2pca SAHDiphthine synthase / 0.772
2eld SAHDiphthine synthase / 0.771
2dxv SAHDiphthine synthase / 0.768
2e8s SAHDiphthine synthase / 0.767
2owk SAHDiphthine synthase / 0.767
2egl SAHDiphthine synthase / 0.763
2ehl SAHDiphthine synthase / 0.763
2p5f SAHDiphthine synthase / 0.762
2eeq SAHDiphthine synthase / 0.761
2pcg SAHDiphthine synthase / 0.761
2egb SAHDiphthine synthase / 0.759
2pcm SAHDiphthine synthase / 0.755
2dv4 SAHDiphthine synthase / 0.753
2pch SAHDiphthine synthase / 0.752
2e8q SAHDiphthine synthase / 0.751
2ek3 SAHDiphthine synthase / 0.749
2owg SAHDiphthine synthase / 0.748
2p6i SAHDiphthine synthase / 0.745
1wng SAHDiphthine synthase / 0.744
2p9d SAHDiphthine synthase / 0.743
2ejj SAHDiphthine synthase / 0.740
2emr SAHDiphthine synthase / 0.740
2dxw SAHDiphthine synthase / 0.735
2eh4 SAHDiphthine synthase / 0.733
1vce SAHDiphthine synthase / 0.729
2ele SAHDiphthine synthase / 0.728
2e8h SAHDiphthine synthase / 0.724
2en5 SAHDiphthine synthase / 0.722
2huq SAHDiphthine synthase / 0.722
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.720
2owu SAHDiphthine synthase / 0.711
2ed3 SAHDiphthine synthase / 0.709
2hux SAHDiphthine synthase / 0.709
1kh2 ATPArgininosuccinate synthase / 0.683
1j21 ATPArgininosuccinate synthase / 0.678
2hr8 SAHDiphthine synthase / 0.677
4cng SAHSpoU rRNA methylase / 0.672
3otx AP5Adenosine kinase, putative / 0.671
2npn SAMPutative cobalamin synthesis related protein / 0.667
2yy8 MTAtRNA (cytidine(56)-2'-O)-methyltransferase / 0.666
3wo1 ADPAlanine--anticapsin ligase / 0.666
2qbu SAHPrecorrin-2 methyltransferase / 0.664
2cx8 SAHRibosomal RNA small subunit methyltransferase E / 0.662
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.661
1mjh ATPUniversal stress protein MJ0577 / 0.661
3wnz ADPAlanine--anticapsin ligase / 0.661
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.660
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.659
4en4 ATPPyridoxal kinase 2.7.1.35 0.658
4cnf MTASpoU rRNA methylase / 0.657
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.656
2ha8 SAHProbable methyltransferase TARBP1 / 0.656
2ybo SAHMethyltransferase / 0.656
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.654
1ruo CMPcAMP-activated global transcriptional regulator CRP / 0.653
2ilv C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.652
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.652
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.651
5ahw CMPUniversal stress protein family protein, putative / 0.651
2ex1 C5PAlpha-2,3/2,6-sialyltransferase/sialidase / 0.650
4ypa SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.650