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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e83 FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e83 FMNFMN-binding protein / 1.068
3vy2 FMNFMN-binding protein / 1.047
3a6r FMNFMN-binding protein / 1.044
3a6q FMNFMN-binding protein / 1.020
1flm FMNFMN-binding protein / 1.018
3awh FMNFMN-binding protein / 1.008
1wlk FMNFMN-binding protein / 0.998
3amf FMNFMN-binding protein / 0.992
3a20 FMNFMN-binding protein / 0.991
3vy5 FMNFMN-binding protein / 0.982
1wli FMNFMN-binding protein / 0.943
2pia FMNPhthalate dioxygenase reductase / 0.713
3qfc FADNADPH--cytochrome P450 reductase / 0.692
3qe2 FADNADPH--cytochrome P450 reductase / 0.691
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.690
3e4v FMNUncharacterized protein / 0.689
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.687
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.684
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.683
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.682
2vnk FADNADPH:ferredoxin reductase / 0.682
2vnj FADNADPH:ferredoxin reductase / 0.679
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.676
3qfs FADNADPH--cytochrome P450 reductase / 0.676
4y9r FADNADPH--cytochrome P450 reductase / 0.676
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.673
2hq9 FADMll6688 protein / 0.673
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.672
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.670
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.670
2bgj FADNADPH:ferredoxin reductase / 0.666
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.665
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.664
3vo2 FADFerredoxin--NADP reductase / 0.663
2rc5 FADFerredoxin--NADP reductase / 0.662
4fk8 FADFerredoxin--NADP reductase / 0.662
2bn4 FADNADPH--cytochrome P450 reductase / 0.660
4f07 FADStyrene monooxygenase component 2 / 0.660
2vnh FADNADPH:ferredoxin reductase / 0.659
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.659
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.658
4y9u FADNADPH--cytochrome P450 reductase / 0.658
4yau FADNADPH--cytochrome P450 reductase / 0.658
2eix FADNADH-cytochrome b5 reductase / 0.657
3ojw FADNADPH--cytochrome P450 reductase / 0.656
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.655
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.655
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.655
1cqx FADFlavohemoprotein / 0.653
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.652
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.652
1v5e FADPyruvate oxidase / 0.652
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.652
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.651
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.651
2dji FADPyruvate oxidase / 0.650
3crz FADFerredoxin--NADP+ reductase / 0.650
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.650