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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c97 JCL 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c97 JCL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.937
1nqw 5YL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.785
1w29 TS06,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.724
1ejb INJ6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.720
2c94 TSF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.710
1w19 T2P6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.692
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.655
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.652