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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2brc CT5 ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.990
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.802
1qy8 RDIEndoplasmin / 0.779
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.753
2wer RDCATP-dependent molecular chaperone HSP82 / 0.750
1u0z RDCEndoplasmin / 0.745
3inw JZBHeat shock protein HSP 90-alpha / 0.743
2bt0 CT5Heat shock protein HSP 90-alpha / 0.730
2yjw YJWHeat shock protein HSP 90-alpha / 0.728
2gfd RDAEndoplasmin / 0.723
2yi6 6QMHeat shock protein HSP 90-alpha / 0.720
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.718
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.713
1yc1 4BCHeat shock protein HSP 90-alpha / 0.708
2bsm BSMHeat shock protein HSP 90-alpha / 0.698
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.695
2yec XQ0Heat shock protein HSP 90-alpha / 0.692
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.690
2ye9 2D4Heat shock protein HSP 90-alpha / 0.689
2cct 2E1Heat shock protein HSP 90-alpha / 0.686
3eko PYUHeat shock protein HSP 90-alpha / 0.681
2xjx XJXHeat shock protein HSP 90-alpha / 0.679
1yc4 43PHeat shock protein HSP 90-alpha / 0.676
2fyp RDEEndoplasmin / 0.676
3k99 PFTHeat shock protein HSP 90-alpha / 0.668
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.665
2byi 2DDHeat shock protein HSP 90-alpha / 0.661
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.654
2xab VHDHeat shock protein HSP 90-alpha / 0.652
2xjj L81Heat shock protein HSP 90-alpha / 0.651
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.650
3hhu 819Heat shock protein HSP 90-alpha / 0.650