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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bgl NAJ Secoisolariciresinol dehydrogenase 1.1.1.331

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bgl NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.900
1zem NADXylitol dehydrogenase / 0.721
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.699
3s55 NADPutative short-chain dehydrogenase/reductase / 0.697
3ko8 NADNAD-dependent epimerase/dehydratase / 0.688
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.681
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.678
1ek5 NADUDP-glucose 4-epimerase / 0.676
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.676
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.673
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.673
1xkq NDPUncharacterized protein / 0.672
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.671
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.667
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.666
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.665
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.665
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.665
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.665
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.664
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.664
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.664
4qed NAPElxO / 0.664
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.663
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.663
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.663
3ajr NADNDP-sugar epimerase / 0.662
3geg NADShort-chain dehydrogenase/reductase SDR / 0.662
3tsc NADUncharacterized protein / 0.661
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.661
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.659
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.659
3ak4 NADNADH-dependent quinuclidinone reductase / 0.658
3a9w NADNDP-sugar epimerase / 0.657
3a4v NADNDP-sugar epimerase / 0.656
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.656
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.655
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.654
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.654
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.654
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.654
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.653
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.653
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.653
4u7w NDPMxaA / 0.653
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.652
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.652
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.651
4fn4 NADShort chain dehydrogenase / 0.651
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.650
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.650