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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2baq PQB Mitogen-activated protein kinase 14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2baq PQBMitogen-activated protein kinase 14 / 1.088
2bal PQAMitogen-activated protein kinase 14 / 0.838
2gfs PQBMitogen-activated protein kinase 14 / 0.797
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ocg OCGMitogen-activated protein kinase 14 / 0.686
3fi3 JK2Mitogen-activated protein kinase 10 2.7.11.24 0.676
4l8m F46Mitogen-activated protein kinase 14 / 0.673
3zsh 469Mitogen-activated protein kinase 14 / 0.667
3ceh AVEGlycogen phosphorylase, liver form 2.4.1.1 0.664
3itz P66Mitogen-activated protein kinase 14 / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4mxo DB8Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.657
3fls FLSMitogen-activated protein kinase 14 / 0.654
4i22 IREEpidermal growth factor receptor 2.7.10.1 0.654
4iu7 1GMEstrogen receptor / 0.652
1di9 MSQMitogen-activated protein kinase 14 / 0.651
3flw FLWMitogen-activated protein kinase 14 / 0.650
4kip 1R9Mitogen-activated protein kinase 14 / 0.650