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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2az9 3TL Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2az9 3TLGag-Pol polyprotein 3.4.23.16 0.860
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1b11 3TLPol polyprotein / 0.712
2cem 2AHPol protein / 0.706
2xyf G40Gag-Pol polyprotein / 0.704
3gga GGWGag-Pol polyprotein / 0.702
2wkz 5AHGag-Pol polyprotein / 0.698
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.695
4a4q UX9Pol protein / 0.695
3kfp 3TLGag-Pol polyprotein / 0.692
2wl0 5AHGag-Pol polyprotein / 0.690
1fmb HYBPol polyprotein / 0.688
1k1u 0Q4Gag-Pol polyprotein 3.4.23.16 0.684
1a94 0Q4Gag-Pol polyprotein 3.4.23.16 0.682
2b60 RITPol polyprotein / 0.681
3zpt M8YGag-Pol polyprotein 3.4.23.16 0.680
3dck KVIProtease / 0.679
4a6c QG9Gag-Pol polyprotein 3.4.23.16 0.679
1k2b 0Q4Gag-Pol polyprotein 3.4.23.16 0.678
1hih C20Gag-Pol polyprotein / 0.677
3tof 076Gag-Pol polyprotein 2.7.7.49 0.676
1vik BAYGag-Pol polyprotein / 0.675
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.671
4a6b QG8Gag-Pol polyprotein 3.4.23.16 0.669
2cen 4AHProtease / 0.668
3zpu M8BGag-Pol polyprotein 3.4.23.16 0.668
1ebk 0Q4Gag-Pol polyprotein 3.4.23.16 0.667
3zps EQMGag-Pol polyprotein 3.4.23.16 0.667
2bqv A1AProtease / 0.666
3kfr 3TLGag-Pol polyprotein / 0.666
3toh 079Gag-Pol polyprotein 2.7.7.49 0.666
4fiv LP1POL protein / 0.664
1hos PHPGag-Pol polyprotein / 0.663
3tog 079Gag-Pol polyprotein 2.7.7.49 0.663
2azb 3TLGag-Pol polyprotein 3.4.23.16 0.662
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.659
3lin E13Protease / 0.659
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.658
1dif A85Gag-Pol polyprotein / 0.657
1ida 0POGag-Pol polyprotein 3.4.23.47 0.656
2fmb LP1Reverse transcriptase / 0.656
1sh9 RITGag-Pol polyprotein 3.4.23.16 0.655
4njv RITProtease / 0.655
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.654
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.653
1n49 RITGag-Pol polyprotein 3.4.23.16 0.652
2xye CXGGag-Pol polyprotein / 0.652
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.651