2.030 Å
X-ray
2005-09-09
Name: | Gag-Pol polyprotein |
---|---|
ID: | POL_HV1BR |
AC: | P03367 |
Organism: | Human immunodeficiency virus type 1 group M subtype B |
Reign: | Viruses |
TaxID: | 11686 |
EC Number: | 3.4.23.16 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 41.220 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.342 | 313.875 |
% Hydrophobic | % Polar |
---|---|
44.09 | 55.91 |
According to VolSite |
HET Code: | 3TL |
---|---|
Formula: | C50H64N6O10 |
Molecular weight: | 909.077 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 32.23 % |
Polar Surface area: | 233.51 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 8 |
Rings: | 4 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 4 |
Rotatable Bonds: | 25 |
X | Y | Z |
---|---|---|
-25.9902 | 37.1024 | 22.5891 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1 | OD1 | ASP- 25 | 2.96 | 155.79 | H-Bond (Ligand Donor) |
O1 | OD2 | ASP- 25 | 3.28 | 141.46 | H-Bond (Ligand Donor) |
CG1 | CB | ALA- 28 | 4.14 | 0 | Hydrophobic |
N4 | OD2 | ASP- 29 | 3.13 | 152.29 | H-Bond (Ligand Donor) |
O4 | N | ASP- 29 | 3.03 | 168.24 | H-Bond (Protein Donor) |
O8 | N | GLY- 48 | 2.66 | 161.63 | H-Bond (Protein Donor) |
N2 | O | GLY- 48 | 3.01 | 165.48 | H-Bond (Ligand Donor) |
C9 | CG1 | ILE- 50 | 3.46 | 0 | Hydrophobic |
CG1 | CG1 | ILE- 84 | 4.31 | 0 | Hydrophobic |