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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2a84 ATP Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2a84 ATPPantothenate synthetase 6.3.2.1 1.237
1n2e APCPantothenate synthetase 6.3.2.1 1.053
1n2g APCPantothenate synthetase 6.3.2.1 0.906
3coy 53HPantothenate synthetase 6.3.2.1 0.801
3cow 52HPantothenate synthetase 6.3.2.1 0.795
3coz 54HPantothenate synthetase 6.3.2.1 0.788
1n2i PAJPantothenate synthetase 6.3.2.1 0.782
3qtt ANPPantothenate synthetase / 0.780
3iod A6DPantothenate synthetase 6.3.2.1 0.750
3ag6 PAJPantothenate synthetase / 0.746
3iob A4DPantothenate synthetase 6.3.2.1 0.743
5hg0 SAMPantothenate synthetase / 0.724
3ioc A5DPantothenate synthetase 6.3.2.1 0.717
3nd6 ATPPhosphopantetheine adenylyltransferase / 0.707
5i4n ATPTyrosine-protein kinase JAK2 / 0.706
3ziu LSSLeucyl-tRNA synthetase / 0.687
4mkf AP5Adenylate kinase / 0.684
2x3f APCPantothenate synthetase / 0.679
2eu8 AP5Adenylate kinase / 0.678
3orl AGSSerine/threonine protein kinase / 0.677
3wqu ATPCell division protein FtsA / 0.675
2q36 ATPActin, alpha skeletal muscle / 0.673
1s22 ATPActin, alpha skeletal muscle / 0.671
1qz5 ATPActin, alpha skeletal muscle / 0.670
1t44 ATPActin, alpha skeletal muscle / 0.670
3zfd ANPChromosome-associated kinesin KIF4 / 0.670
4b1v ATPActin, alpha skeletal muscle / 0.670
4pkg ATPActin, alpha skeletal muscle / 0.670
4k41 ATPActin, alpha skeletal muscle / 0.669
4idp GNPAtlastin-1 3.6.5 0.668
2nv4 SAMS-adenosyl-L-methionine-binding protein AF_0241 / 0.666
4a6a TTPdCTP deaminase 3.5.4.13 0.664
3a5o ATPMajor actin / 0.662
4xsv C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.662
5jlj GNPGTP-binding nuclear protein Ran / 0.662
1coz CTPGlycerol-3-phosphate cytidylyltransferase 2.7.7.39 0.661
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.661
4lv8 ADPRhoptry protein 5 C / 0.660
3a5m ATPMajor actin / 0.659
1p3j AP5Adenylate kinase / 0.658
4dso GSPGTPase KRas / 0.658
1f5n GNPGuanylate-binding protein 1 / 0.657
1u70 MTXDihydrofolate reductase 1.5.1.3 0.657
2qaj AP5Adenylate kinase / 0.657
3upy FOMOxidoreductase, putative / 0.657
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.656
4hdo GNPRas-related protein Rap-1b / 0.656
4nu0 AP5Adenylate kinase / 0.656
5erm 210Fusicoccadiene synthase 4.2.3.43 0.656
4dls GNPGTPase HRas / 0.655
4dlx GNPGTPase HRas / 0.655
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.654
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.653
1xs4 DCPdCTP deaminase / 0.653
2a41 ATPActin, alpha skeletal muscle / 0.653
3l8y GNPGTPase HRas / 0.653
3tgp GNPGTPase HRas / 0.653
4idn GNPAtlastin-1 3.6.5 0.653
4l9w GNPGTPase HRas / 0.653
5bnw 12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit / 0.653
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.652
4goj GNPADP-ribosylation factor-like protein 3 / 0.652
1fa0 3ATPoly(A) polymerase 2.7.7.19 0.651
3mn9 ATPActin-5C / 0.651
3ftq GNPSeptin-2 / 0.650