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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zwl FMN NAD(P)H dehydrogenase (quinone) 1.6.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 1.086
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.905
3klb FMNUncharacterized protein / 0.890
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.884
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.877
4j8p FMNFlavodoxin / 0.870
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.846
4r81 FMNPredicted NADH dehydrogenase / 0.763
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.759
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.756
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.755
1azl FMNFlavodoxin / 0.750
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.750
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.748
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.744
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.741
3qe2 FMNNADPH--cytochrome P450 reductase / 0.741
1ycf FMNNitric oxide reductase 1 0.740
2q9u FMNA-type flavoprotein / 0.740
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.736
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.734
1akw FMNFlavodoxin / 0.731
2ohh FMNType A flavoprotein FprA 1 0.731
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.730
1akr FMNFlavodoxin / 0.727
1ycg FMNNitric oxide reductase 1 0.723
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.722
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.716
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.714
2ohj FMNType A flavoprotein FprA 1 0.714
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.714
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.713
1xyv FMNFlavodoxin / 0.710
3esz FMNFlavodoxin / 0.710
2bf4 FMNNADPH--cytochrome P450 reductase / 0.706
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.706
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.706
2r96 FMNNAD(P)H dehydrogenase (quinone) / 0.704
3n3b FMNProtein NrdI / 0.704
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.702
1j8q FMNFlavodoxin / 0.701
3qfr FMNNADPH--cytochrome P450 reductase / 0.700
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.695
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.693
5tgz FMNCannabinoid receptor 1 / 0.693
3n39 FMNProtein NrdI / 0.691
2fzm FADBifunctional protein PutA 1.5.5.2 0.690
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.687
3lcm FADPutative oxidoreductase / 0.687
2v5u FMNFlavodoxin / 0.686
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.686
4bmo FMNProtein NrdI / 0.683
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.683
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.682
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.681
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.680
5xr8 FMNCannabinoid receptor 1 / 0.680
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.679
2fx2 FMNFlavodoxin / 0.678
3f90 FMNFlavodoxin / 0.678
1ahn FMNFlavodoxin 1 / 0.677
1wsb FMNFlavodoxin / 0.677
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.677
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.675
2z1q FADAcyl-CoA dehydrogenase / 0.671
4oxx FMNCindoxin / 0.671
1c7f FMNFlavodoxin / 0.669
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.669
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.667
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.667
1amo FMNNADPH--cytochrome P450 reductase / 0.666
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.666
2bn4 FMNNADPH--cytochrome P450 reductase / 0.664
2fcr FMNFlavodoxin / 0.664
1yob FMNFlavodoxin 2 / 0.663
3p8i FMNPentaerythritol tetranitrate reductase / 0.663
4h6r FDAProline dehydrogenase / 0.663
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.662
1z48 FMNNADPH dehydrogenase / 0.662
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.662
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.662
1h50 FMNPentaerythritol tetranitrate reductase / 0.661
3ojw FMNNADPH--cytochrome P450 reductase / 0.661
1tj1 FADBifunctional protein PutA 1.5.5.2 0.660
1j9g FMNFlavodoxin / 0.659
4y7c FMNNADPH--cytochrome P450 reductase / 0.659
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.657
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.657
1p0n FMNIsopentenyl-diphosphate delta-isomerase / 0.657
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.656
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.655
3ue6 FMNAureochrome1 / 0.655
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.655
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.654
3f6s FMNFlavodoxin / 0.654
4qly FMNEnone reductase CLA-ER / 0.654
2h8x FMNXenA / 0.653
4qai FMNNADPH dehydrogenase / 0.653
5efw FMNNPH1-1 / 0.653
1r2j FADFkbI / 0.652
2j6x FMNLactate oxidase / 0.652
2pg0 FADAcyl-CoA dehydrogenase / 0.652
3l67 FMNXenobiotic reductase / 0.652
3n3a FMNProtein NrdI / 0.651
4cw5 FMNDfnA / 0.651
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.650