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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zvl H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.904
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.877
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.876
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.875
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.875
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.874
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.874
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.874
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.874
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.873
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.873
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.873
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.873
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.872
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.872
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.872
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.871
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.871
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.871
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.871
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.869
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.869
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.869
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.867
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.864
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.861
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.860
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.859
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.858
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.858
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.857
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.857
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.856
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.855
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.855
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.853
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.853
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.853
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.853
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.851
3png H4BNitric oxide synthase, brain 1.14.13.39 0.851
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.851
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.851
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.848
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.847
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.842
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.841
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.840
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.839
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.839
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.838
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.838
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.837
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.837
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.837
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.836
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.836
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.836
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.836
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.835
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.835
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.834
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.832
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.831
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.830
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.830
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.829
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.829
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.824
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.819
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.819
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.817
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.816
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.816
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.816
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.814
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.812
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.812
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.809
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.807
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.803
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.802
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.799
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.795
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.794
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.794
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.790
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.785
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.781
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.779
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.775
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.775
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.774
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.770
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.766
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.736
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.728
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.719
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.712
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.707
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.705
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.704
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.678
4e5f 0N7Polymerase acidic protein / 0.660
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.654