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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zky 689 Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zky 689Estrogen receptor / 1.131
2qgt EEDEstrogen receptor / 0.860
2fai 459Estrogen receptor / 0.793
3l03 4OHEstrogen receptor / 0.757
3oll ESTEstrogen receptor beta / 0.748
2q70 DC8Estrogen receptor / 0.742
1zaf 789Estrogen receptor beta / 0.717
4pp6 STLEstrogen receptor / 0.711
2bj4 OHTEstrogen receptor / 0.705
4j26 ESTEstrogen receptor beta / 0.698
4iwf 15QEstrogen receptor / 0.694
1x7e 244Estrogen receptor / 0.689
1u9e 397Estrogen receptor beta / 0.687
1x78 244Estrogen receptor beta / 0.673
4iwc 1GVEstrogen receptor / 0.672
1lhu ESTSex hormone-binding globulin / 0.661
2yja ESTEstrogen receptor / 0.661
4e5f 0N7Polymerase acidic protein / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4iu7 1GMEstrogen receptor / 0.653
1x7r GENEstrogen receptor / 0.650