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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zgd NAP Chalcone reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1zgd NAPChalcone reductase / 1.314
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.967
3q67 NAPAldose reductase 1.1.1.21 0.945
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.937
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.920
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 0.920
2pev NDPAldose reductase 1.1.1.21 0.913
2pf8 NDPAldose reductase 1.1.1.21 0.913
3wcz NAPAldo-keto reductase AKR2E4 / 0.902
3uzw NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.901
2j8t NAPAldose reductase 1.1.1.21 0.900
1z8a NAPAldose reductase 1.1.1.21 0.896
1x98 NAPAldose reductase 1.1.1.21 0.893
5c7h NDPPutative oxidoreductase / 0.884
1ads NAPAldose reductase 1.1.1.21 0.883
3v36 NAPAldose reductase 1.1.1.21 0.878
2iq0 NAPAldose reductase 1.1.1.21 0.867
2acq NAPAldose reductase 1.1.1.21 0.866
1x96 NAPAldose reductase 1.1.1.21 0.848
4pmj NAPPutative oxidoreductase / 0.847
3q65 NAPAldose reductase 1.1.1.21 0.839
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.836
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.835
3o3r NAPAldose reductase-related protein 1 1.1.1.21 0.835
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.827
2pfh NDPAldose reductase 1.1.1.21 0.826
4l1x NAPAldo-keto reductase family 1 member C2 / 0.826
3h7r NAPAldo-keto reductase family 4 member C8 / 0.825
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.821
4g5d NDPProstaglandin F synthase 1.1.1.188 0.821
4jtq NAPAldo-keto reductase family 1 member C2 / 0.803
1ef3 NAPAldose reductase 1.1.1.21 0.801
2acs NAPAldose reductase 1.1.1.21 0.798
2acu NAPAldose reductase 1.1.1.21 0.798
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.786
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.785
2bgs NDPAldose reductase 1.1.1.21 0.776
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.771
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.767
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.766
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.766
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.766
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.763
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.757
1s1p NAPAldo-keto reductase family 1 member C3 / 0.755
3qkz NAPAldose reductase-related protein 1 1.1.1.21 0.755
1s1r NAPAldo-keto reductase family 1 member C3 / 0.745
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.738
2hdj NDPAldo-keto reductase family 1 member C2 / 0.728
1az2 NAPAldose reductase 1.1.1.21 0.720
1ye6 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.716
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.714
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.706
1ah4 NAPAldose reductase 1.1.1.21 0.699
1c9w NAPAldose reductase-related protein 2 / 0.684
3ln3 NADAldo-keto reductase family 1 member C13 / 0.677
1z9a NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.670
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.667
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 0.666
1og6 NAPOxidoreductase YdhF 1 0.664
5a06 NDPGlucose-fructose oxidoreductase / 0.662
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.653