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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z71 L17 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1z71 L17Prothrombin 3.4.21.5 1.139
1sl3 170Prothrombin 3.4.21.5 1.007
1mu8 CDBProthrombin 3.4.21.5 0.914
1mu6 CDAProthrombin 3.4.21.5 0.906
1nm6 L86Prothrombin 3.4.21.5 0.896
1mue CDDProthrombin 3.4.21.5 0.882
2r2m I50Prothrombin 3.4.21.5 0.836
2bxt C2DProthrombin 3.4.21.5 0.815
1nt1 T76Prothrombin 3.4.21.5 0.785
3c1k T15Prothrombin 3.4.21.5 0.758
3c27 DKKProthrombin 3.4.21.5 0.758
3dux 64UProthrombin 3.4.21.5 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1ta6 177Prothrombin 3.4.21.5 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2zgb 21UProthrombin 3.4.21.5 0.743
1ta2 176Prothrombin 3.4.21.5 0.734
3dhk 23UProthrombin 3.4.21.5 0.728
3eq0 2TSProthrombin 3.4.21.5 0.722
1zgi 382Prothrombin 3.4.21.5 0.720
2zf0 51UProthrombin 3.4.21.5 0.719
4e7r 0NWProthrombin 3.4.21.5 0.707
2zfp 19UProthrombin 3.4.21.5 0.706
1zrb 062Prothrombin 3.4.21.5 0.705
2zc9 22UProthrombin 3.4.21.5 0.691
2bdy UNBProthrombin 3.4.21.5 0.690
1ype UIPProthrombin 3.4.21.5 0.683
4ayy 9MXProthrombin 3.4.21.5 0.681
4bah MELProthrombin 3.4.21.5 0.679
1k22 MELProthrombin 3.4.21.5 0.676
2zg0 50UProthrombin 3.4.21.5 0.675
2znk 31UProthrombin 3.4.21.5 0.675
3f68 91UProthrombin 3.4.21.5 0.675
4bak M67Prothrombin 3.4.21.5 0.673
4bao MVFProthrombin 3.4.21.5 0.672
4loy 6XSProthrombin 3.4.21.5 0.672
2zdv 37UProthrombin 3.4.21.5 0.670
2zff 53UProthrombin 3.4.21.5 0.670
4ax9 N5NProthrombin 3.4.21.5 0.670
1ypj UIBProthrombin 3.4.21.5 0.669
2bvs 2CEProthrombin 3.4.21.5 0.667
3utu 1TSProthrombin 3.4.21.5 0.667
2anm CDOProthrombin 3.4.21.5 0.663
4ban M6SProthrombin 3.4.21.5 0.661
4e5f 0N7Polymerase acidic protein / 0.660
2jh0 701Prothrombin 3.4.21.5 0.658
2zda 32UProthrombin 3.4.21.5 0.658
2y82 930Coagulation factor X 3.4.21.6 0.656
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.656
1c4y IH3Prothrombin 3.4.21.5 0.654
1vzq SHYProthrombin 3.4.21.5 0.653
1d9i 00PProthrombin 3.4.21.5 0.651
1ypg UIRProthrombin 3.4.21.5 0.650
4ayv 9MQProthrombin 3.4.21.5 0.650