Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yki FMN Oxygen-insensitive NAD(P)H nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 1.313
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 1.247
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.246
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 1.246
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 1.237
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 1.232
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 1.215
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 1.205
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 1.155
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.143
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.089
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.087
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 1.050
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 1.050
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.017
3ge6 FMNNitroreductase / 1.006
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.991
2wzv FMNNitroreductase NfnB / 0.971
3koq FMNPutative nitroreductase / 0.959
2wzw FMNNitroreductase NfnB / 0.956
3pxv FMNNitroreductase / 0.906
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.900
4qly FMNEnone reductase CLA-ER / 0.887
3of4 FMNNitroreductase / 0.870
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.853
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.847
3e39 FMNNitroreductase / 0.839
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.816
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.810
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.807
2ifa FMNUncharacterized protein / 0.804
3hj9 FMNUncharacterized protein / 0.755
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.745
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.745
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.742
3eo8 FMNPutative nitroreductase / 0.741
3oib FDAPutative acyl-CoA dehydrogenase / 0.728
4hnb FMNLOV protein / 0.725
2fre FMNNAD(P)H-flavin oxidoreductase / 0.724
2bkj FMNNADPH-flavin oxidoreductase / 0.718
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.715
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.711
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.708
4ttb FMNIodotyrosine deiodinase 1 / 0.706
2c12 FADNitroalkane oxidase 1.7.3.1 0.701
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.701
4ttc FMNIodotyrosine deiodinase 1 / 0.701
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.700
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.695
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.693
2z1q FADAcyl-CoA dehydrogenase / 0.692
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.692
2z6c FMNPhototropin-1 2.7.11.1 0.683
3urh FADDihydrolipoyl dehydrogenase / 0.681
2pg0 FADAcyl-CoA dehydrogenase / 0.680
3p4t FAOPutative acyl-CoA dehydrogenase / 0.680
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.676
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.675
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.674
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.673
5j3w FMNSensory box protein / 0.671
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.670
1eje FMNProtein MTH_152 / 0.669
1tyt FADTrypanothione reductase 1.8.1.12 0.669
4m9a FDAAcyl-CoA dehydrogenase / 0.669
4kuk RBFPutative blue-light photoreceptor / 0.668
2o12 FMNChorismate synthase / 0.665
4qi5 FADCellobiose dehydrogenase / 0.665
3bnk FMNFlavoredoxin / 0.664
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.664
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.663
1aj2 2PHDihydropteroate synthase / 0.660
4jy2 FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.660
1qlt FADVanillyl-alcohol oxidase 1.1.3.38 0.658
3dh7 FMNIsopentenyl-diphosphate delta-isomerase / 0.657
3p7n FMNLight-activated DNA-binding protein EL222 / 0.657
4iil RBFMembrane lipoprotein TpN38(b) / 0.657
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.656
3atr FDAConserved Archaeal protein / 0.656
1a8p FADFerredoxin--NADP reductase / 0.655
1tdk FADL-amino-acid oxidase 1.4.3.2 0.654
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.654
1fea FADTrypanothione reductase 1.8.1.12 0.653
3e4v FMNUncharacterized protein / 0.653
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.652
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.651
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.651
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.650
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.650