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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x76 697 Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x76 697Estrogen receptor beta / 0.990
1x7b 041Estrogen receptor beta / 0.888
1u9e 397Estrogen receptor beta / 0.825
1x7e 244Estrogen receptor / 0.784
1x78 244Estrogen receptor beta / 0.781
2nv7 555Estrogen receptor beta / 0.780
3oll ESTEstrogen receptor beta / 0.778
1yy4 4NAEstrogen receptor beta / 0.761
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4pp6 STLEstrogen receptor / 0.734
1gwq ZTWEstrogen receptor / 0.710
2qa8 GENEstrogen receptor / 0.701
2j7y E3OEstrogen receptor beta / 0.700
2pog WSTEstrogen receptor / 0.690
4dma 0L8Estrogen receptor / 0.685
4iu7 1GMEstrogen receptor / 0.685
4j24 ESTEstrogen receptor beta / 0.683
2jj3 JJ3Estrogen receptor beta / 0.680
2qgt EEDEstrogen receptor / 0.676
4iw6 1GUEstrogen receptor / 0.676
1zky 689Estrogen receptor / 0.675
2q70 DC8Estrogen receptor / 0.667
2g5o DRQEstrogen receptor / 0.663
2qe4 JJ3Estrogen receptor / 0.662
1x7r GENEstrogen receptor / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1zaf 789Estrogen receptor beta / 0.658
4a9t A9TSerine/threonine-protein kinase Chk2 2.7.11.1 0.657
2uxh QUEHTH-type transcriptional regulator TtgR / 0.656
4bkj STIEpithelial discoidin domain-containing receptor 1 2.7.10.1 0.651