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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x31 FMN Subunit alpha of sarocosine oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x31 FMNSubunit alpha of sarocosine oxidase / 1.283
1x31 FMNSubunit beta of sarcosine oxidase / 1.283
1vrq FMNSubunit alpha of sarocosine oxidase / 1.240
1vrq FMNSubunit beta of sarcosine oxidase / 1.240
4eeu FMNPhototropin-2 2.7.11.1 0.699
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.688
1y56 FMNUncharacterized protein / 0.685
1y56 FMN382aa long hypothetical sarcosine oxidase / 0.685
3eo8 FMNPutative nitroreductase / 0.680
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.676
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.675
4yl2 FMNLactate oxidase / 0.674
2a58 RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.671
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.671
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.668
3sw1 FMNSensory box protein / 0.663
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.659
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.657
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.657
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.655
5kbw RBFRiboflavin transporter RibU / 0.655
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.653
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.653
4kx6 FADFumarate reductase flavoprotein subunit 1.3.5.4 0.651
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.650
4nmc FADBifunctional protein PutA / 0.650