Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uyi PUZ Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uyi PUZHeat shock protein HSP 90-alpha / 1.148
1uyh PU0Heat shock protein HSP 90-alpha / 0.892
1uyf PU1Heat shock protein HSP 90-alpha / 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2h55 DZ8Heat shock protein HSP 90-alpha / 0.703
1uyc PU7Heat shock protein HSP 90-alpha / 0.687
3o0i P54Heat shock protein HSP 90-alpha / 0.684
1uy7 PU4Heat shock protein HSP 90-alpha / 0.678
1uyk PUXHeat shock protein HSP 90-alpha / 0.673
3acy 702Dehydrosqualene synthase / 0.673
4e5f 0N7Polymerase acidic protein / 0.660
3o6o 94MHeat shock protein 83 / 0.650