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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1uyf PU1 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1uyf PU1Heat shock protein HSP 90-alpha / 1.216
1uye PU9Heat shock protein HSP 90-alpha / 0.948
1uy6 PU3Heat shock protein HSP 90-alpha / 0.885
1uym PU3Heat shock protein HSP 90-beta / 0.874
2h55 DZ8Heat shock protein HSP 90-alpha / 0.789
1uy9 PU6Heat shock protein HSP 90-alpha / 0.765
1uyd PU8Heat shock protein HSP 90-alpha / 0.762
1uy8 PU5Heat shock protein HSP 90-alpha / 0.760
1uyi PUZHeat shock protein HSP 90-alpha / 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1uy7 PU4Heat shock protein HSP 90-alpha / 0.735
3qdd 94MHeat shock protein HSP 90-alpha / 0.731
2fwz H71Heat shock protein HSP 90-alpha / 0.727
3o6o 94MHeat shock protein 83 / 0.697
3o0i P54Heat shock protein HSP 90-alpha / 0.683
2fwy H64Heat shock protein HSP 90-alpha / 0.675
4nh9 2LCEndoplasmin / 0.667
4nh8 2LCHeat shock protein HSP 90-alpha / 0.664
4e5f 0N7Polymerase acidic protein / 0.660
1uyc PU7Heat shock protein HSP 90-alpha / 0.657
1sez OMNProtoporphyrinogen oxidase, mitochondrial 1.3.3.4 0.654
3d0b SNXHeat shock protein HSP 90-alpha / 0.654
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.650
3r4n FU5Heat shock protein HSP 90-alpha / 0.650