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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u2o NEC Endoplasmin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u2o NECEndoplasmin / 0.861
1u0y PA7Endoplasmin / 0.779
2gqp PA7Endoplasmin / 0.772
1qy5 NECEndoplasmin / 0.757
1ysz NECEndoplasmin / 0.752
2hg1 N5OEndoplasmin / 0.748
2hch N5AEndoplasmin / 0.726
1amw ADPATP-dependent molecular chaperone HSP82 / 0.667
2ior ADPChaperone protein HtpG / 0.666
2wep ADPATP-dependent molecular chaperone HSP82 / 0.664
1am1 ADPATP-dependent molecular chaperone HSP82 / 0.661
4xcj ADPHeat shock cognate 90 kDa protein / 0.658