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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u0z RDC Endoplasmin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u0z RDCEndoplasmin / 1.007
1qy8 RDIEndoplasmin / 0.958
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.877
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.855
4egk RDCHeat shock protein HSP 90-alpha / 0.846
2wer RDCATP-dependent molecular chaperone HSP82 / 0.838
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.798
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.789
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.788
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.786
3inw JZBHeat shock protein HSP 90-alpha / 0.779
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.765
3k97 4CDHeat shock protein HSP 90-alpha / 0.765
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.759
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.758
3inx JZCHeat shock protein HSP 90-alpha / 0.752
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.752
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.745
2gfd RDAEndoplasmin / 0.743
3hek BD0Heat shock protein HSP 90-alpha / 0.740
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.739
4b7p 9UNHeat shock protein HSP 90-alpha / 0.727
3k99 PFTHeat shock protein HSP 90-alpha / 0.725
3eko PYUHeat shock protein HSP 90-alpha / 0.724
2q8i RDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial 2.7.11.2 0.721
3ekr PY9Heat shock protein HSP 90-alpha / 0.720
2ye4 2FYHeat shock protein HSP 90-alpha / 0.719
2xjx XJXHeat shock protein HSP 90-alpha / 0.717
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.711
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.708
3k98 1RCHeat shock protein HSP 90-alpha / 0.704
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.701
4bqj XKLHeat shock protein HSP 90-alpha / 0.701
2xab VHDHeat shock protein HSP 90-alpha / 0.700
2xjj L81Heat shock protein HSP 90-alpha / 0.698
2yk2 YJWHeat shock protein HSP 90-alpha / 0.696
4efu EFUHeat shock protein HSP 90-alpha / 0.696
2yi5 YI5Heat shock protein HSP 90-alpha / 0.690
2byi 2DDHeat shock protein HSP 90-alpha / 0.689
2ye9 2D4Heat shock protein HSP 90-alpha / 0.685
4mpe PV8[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.683
2xjg XJGHeat shock protein HSP 90-alpha / 0.682
4mpn PV0[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.682
2yjw YJWHeat shock protein HSP 90-alpha / 0.678
4mpc PV2[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.678
2bt0 CT5Heat shock protein HSP 90-alpha / 0.669
2vcj 2EQHeat shock protein HSP 90-alpha / 0.669
4egh 0OYHeat shock protein HSP 90-alpha / 0.669
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.668
2fyp RDEEndoplasmin / 0.668
2qg0 A94Heat shock protein HSP 90-alpha / 0.651