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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u0h FOK Adenylate cyclase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1u0h FOKAdenylate cyclase type 2 / 1.006
1u0h FOKAdenylate cyclase type 5 / 1.006
1cjt FOKAdenylate cyclase type 2 / 0.907
1cjt FOKAdenylate cyclase type 5 / 0.907
1cjv FOKAdenylate cyclase type 2 / 0.877
1cjv FOKAdenylate cyclase type 5 / 0.877
1cs4 FOKAdenylate cyclase type 2 / 0.859
1cs4 FOKAdenylate cyclase type 5 / 0.859
1cju FOKAdenylate cyclase type 2 / 0.855
1cju FOKAdenylate cyclase type 5 / 0.855
3maa FKPAdenylate cyclase type 2 / 0.853
3maa FKPAdenylate cyclase type 5 / 0.853
2gvd FKPAdenylate cyclase type 2 / 0.847
2gvd FKPAdenylate cyclase type 5 / 0.847
1cul FOKAdenylate cyclase type 2 / 0.843
1cul FOKAdenylate cyclase type 5 / 0.843
1cjk FOKAdenylate cyclase type 2 / 0.842
1cjk FOKAdenylate cyclase type 5 / 0.842
1tl7 FOKAdenylate cyclase type 2 / 0.812
1tl7 FOKAdenylate cyclase type 5 / 0.812
3c16 FOKAdenylate cyclase type 2 / 0.811
3c16 FOKAdenylate cyclase type 5 / 0.811
3c15 FOKAdenylate cyclase type 2 / 0.804
3c15 FOKAdenylate cyclase type 5 / 0.804
3c14 FOKAdenylate cyclase type 2 / 0.787
3c14 FOKAdenylate cyclase type 5 / 0.787