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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ta2 176 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ta2 176Prothrombin 3.4.21.5 1.022
3dhk 23UProthrombin 3.4.21.5 0.890
2zc9 22UProthrombin 3.4.21.5 0.848
2zff 53UProthrombin 3.4.21.5 0.839
2zdv 37UProthrombin 3.4.21.5 0.819
3dux 64UProthrombin 3.4.21.5 0.818
2zgb 21UProthrombin 3.4.21.5 0.817
2zf0 51UProthrombin 3.4.21.5 0.805
2zfp 19UProthrombin 3.4.21.5 0.805
3qto 10PProthrombin 3.4.21.5 0.798
3f68 91UProthrombin 3.4.21.5 0.797
3eq0 2TSProthrombin 3.4.21.5 0.791
3p17 99PProthrombin 3.4.21.5 0.784
2znk 31UProthrombin 3.4.21.5 0.781
1sl3 170Prothrombin 3.4.21.5 0.780
2zg0 50UProthrombin 3.4.21.5 0.780
1ta6 177Prothrombin 3.4.21.5 0.777
1mue CDDProthrombin 3.4.21.5 0.767
2zda 32UProthrombin 3.4.21.5 0.765
3qtv 06PProthrombin 3.4.21.5 0.762
1nt1 T76Prothrombin 3.4.21.5 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2anm CDOProthrombin 3.4.21.5 0.743
1nm6 L86Prothrombin 3.4.21.5 0.741
1z71 L17Prothrombin 3.4.21.5 0.735
3qwc 98PProthrombin 3.4.21.5 0.726
1k22 MELProthrombin 3.4.21.5 0.720
2zgx 29UProthrombin 3.4.21.5 0.719
2zhq 27UProthrombin 3.4.21.5 0.718
4ban M6SProthrombin 3.4.21.5 0.718
4bam MM9Prothrombin 3.4.21.5 0.717
4baq M4ZProthrombin 3.4.21.5 0.716
5cmx 0G6Prothrombin 3.4.21.5 0.716
2zi2 24UProthrombin 3.4.21.5 0.714
4bah MELProthrombin 3.4.21.5 0.714
1nzq 162Prothrombin 3.4.21.5 0.712
4bak M67Prothrombin 3.4.21.5 0.710
1k21 IGNProthrombin 3.4.21.5 0.709
1o0d 163Prothrombin 3.4.21.5 0.708
1mu8 CDBProthrombin 3.4.21.5 0.707
2zhf 49UProthrombin 3.4.21.5 0.700
1ypl RA8Prothrombin 3.4.21.5 0.697
3utu 1TSProthrombin 3.4.21.5 0.697
2zfq 45UProthrombin 3.4.21.5 0.695
4bao MVFProthrombin 3.4.21.5 0.693
2zhe 13UProthrombin 3.4.21.5 0.692
4ayy 9MXProthrombin 3.4.21.5 0.684
2a2x NA9Prothrombin 3.4.21.5 0.672
2zfr 46UProthrombin 3.4.21.5 0.670
1ypm RA4Prothrombin 3.4.21.5 0.668
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.667
1d6w 00RProthrombin 3.4.21.5 0.666
2ziq 26UProthrombin 3.4.21.5 0.665
4e5f 0N7Polymerase acidic protein / 0.660
1riw OSCProthrombin 3.4.21.5 0.658
2bxt C2DProthrombin 3.4.21.5 0.658
1jwt BLIProthrombin 3.4.21.5 0.656
4ax9 N5NProthrombin 3.4.21.5 0.656
1zgv 501Prothrombin 3.4.21.5 0.655
3c1k T15Prothrombin 3.4.21.5 0.652