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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t9g FAD Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.447
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.151
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.012
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.993
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.981
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.929
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.924
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.920
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.897
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.876
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.867
3p4t FAOPutative acyl-CoA dehydrogenase / 0.865
2eba FADPutative glutaryl-CoA dehydrogenase / 0.850
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.844
4m9a FDAAcyl-CoA dehydrogenase / 0.839
2dvl FADAcyl-CoA dehydrogenase / 0.835
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.834
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.822
5af7 FADAcyl-CoA dehydrogenase / 0.820
5jsc FADPutative acyl-CoA dehydrogenase / 0.802
2pg0 FADAcyl-CoA dehydrogenase / 0.795
3owa FADAcyl-CoA dehydrogenase / 0.795
3oib FDAPutative acyl-CoA dehydrogenase / 0.790
2fon FADAcyl-coenzyme A oxidase / 0.784
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.778
5ahs FADAcyl-CoA dehydrogenase / 0.769
3r7k FDAProbable acyl CoA dehydrogenase / 0.759
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.734
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.721
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.721
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.721
2zaf FADNitroalkane oxidase 1.7.3.1 0.720
1r2j FADFkbI / 0.696
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.683
2d29 FADAcyl-CoA dehydrogenase / 0.679
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.678
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.673
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.673
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
4irn FADAnaB / 0.670
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.669
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.665
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.664
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.663
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
1a8p FADFerredoxin--NADP reductase / 0.659
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
3esz FMNFlavodoxin / 0.658
2fre FMNNAD(P)H-flavin oxidoreductase / 0.656
2ohj FMNType A flavoprotein FprA 1 0.656
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.656
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.652
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
2bkj FMNNADPH-flavin oxidoreductase / 0.651
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.651
3fcj FADNitroalkane oxidase 1.7.3.1 0.650