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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sqk LAR Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sqk LARActin, alpha skeletal muscle / 0.934
4b1v LABActin, alpha skeletal muscle / 0.811
2v52 LABActin, alpha skeletal muscle / 0.808
3sjh LARActin, alpha skeletal muscle / 0.802
1rdw LARActin, alpha skeletal muscle / 0.772
4h0t LARActin, alpha skeletal muscle / 0.769
4b1u LABActin, alpha skeletal muscle / 0.767
2v51 LABActin, alpha skeletal muscle / 0.739
1esv LARActin, alpha skeletal muscle / 0.712
4gy2 LARActin, alpha skeletal muscle / 0.706
2q0u LABActin, alpha skeletal muscle / 0.684
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660