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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sl3 170 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sl3 170Prothrombin 3.4.21.5 1.081
1z71 L17Prothrombin 3.4.21.5 1.007
1mue CDDProthrombin 3.4.21.5 0.987
1mu8 CDBProthrombin 3.4.21.5 0.906
1mu6 CDAProthrombin 3.4.21.5 0.885
1nm6 L86Prothrombin 3.4.21.5 0.885
3c1k T15Prothrombin 3.4.21.5 0.851
2zgb 21UProthrombin 3.4.21.5 0.819
1ta6 177Prothrombin 3.4.21.5 0.810
3dux 64UProthrombin 3.4.21.5 0.806
3dhk 23UProthrombin 3.4.21.5 0.802
2bxt C2DProthrombin 3.4.21.5 0.800
2r2m I50Prothrombin 3.4.21.5 0.800
1nt1 T76Prothrombin 3.4.21.5 0.789
1ta2 176Prothrombin 3.4.21.5 0.780
2zc9 22UProthrombin 3.4.21.5 0.780
2zfp 19UProthrombin 3.4.21.5 0.766
3f68 91UProthrombin 3.4.21.5 0.766
2zf0 51UProthrombin 3.4.21.5 0.763
1zrb 062Prothrombin 3.4.21.5 0.757
2zdv 37UProthrombin 3.4.21.5 0.757
3eq0 2TSProthrombin 3.4.21.5 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3c27 DKKProthrombin 3.4.21.5 0.743
2zff 53UProthrombin 3.4.21.5 0.742
2znk 31UProthrombin 3.4.21.5 0.737
4bao MVFProthrombin 3.4.21.5 0.714
4bam MM9Prothrombin 3.4.21.5 0.713
3qwc 98PProthrombin 3.4.21.5 0.709
4bah MELProthrombin 3.4.21.5 0.705
2anm CDOProthrombin 3.4.21.5 0.703
2zda 32UProthrombin 3.4.21.5 0.702
4ban M6SProthrombin 3.4.21.5 0.696
1xm1 GAHProthrombin 3.4.21.5 0.695
3utu 1TSProthrombin 3.4.21.5 0.695
4bak M67Prothrombin 3.4.21.5 0.694
4loy 6XSProthrombin 3.4.21.5 0.692
1zgi 382Prothrombin 3.4.21.5 0.689
4e7r 0NWProthrombin 3.4.21.5 0.689
2zfq 45UProthrombin 3.4.21.5 0.688
3p17 99PProthrombin 3.4.21.5 0.685
1k22 MELProthrombin 3.4.21.5 0.683
2zg0 50UProthrombin 3.4.21.5 0.682
2zhq 27UProthrombin 3.4.21.5 0.679
2bvs 2CEProthrombin 3.4.21.5 0.677
2zi2 24UProthrombin 3.4.21.5 0.674
4baq M4ZProthrombin 3.4.21.5 0.674
1ype UIPProthrombin 3.4.21.5 0.671
2zgx 29UProthrombin 3.4.21.5 0.670
1o0d 163Prothrombin 3.4.21.5 0.667
2jh0 701Prothrombin 3.4.21.5 0.667
2zhf 49UProthrombin 3.4.21.5 0.667
2jh6 894Prothrombin 3.4.21.5 0.664
1ypl RA8Prothrombin 3.4.21.5 0.663
2y82 930Coagulation factor X 3.4.21.6 0.663
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.663
4lxb 7R9Prothrombin 3.4.21.5 0.660
2gde SN3Prothrombin 3.4.21.5 0.659
1d9i 00PProthrombin 3.4.21.5 0.658
4btu 6XSCoagulation factor X 3.4.21.6 0.657
2ziq 26UProthrombin 3.4.21.5 0.655
1ypj UIBProthrombin 3.4.21.5 0.652
3qtv 06PProthrombin 3.4.21.5 0.652