Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sbz FMN Probable UbiX-like flavin prenyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1sbz FMNProbable UbiX-like flavin prenyltransferase / 1.113
4rhe FMNFlavin prenyltransferase UbiX / 0.825
1g63 FMNEpidermin decarboxylase 4.1.1 0.715
2iml FMNUncharacterized protein / 0.676
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.673
1eje FMNProtein MTH_152 / 0.668
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.661
5ez7 FADProbable FAD-dependent oxidoreductase PA4991 / 0.661
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.660
1usc FMNMonooxygenase / 0.659
2bf4 FADNADPH--cytochrome P450 reductase / 0.659
2c12 FADNitroalkane oxidase 1.7.3.1 0.658
2rgh FADAlpha-Glycerophosphate Oxidase / 0.658
1kif FADD-amino-acid oxidase 1.4.3.3 0.655
1sm4 FADFerredoxin--NADP reductase / 0.655
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.655
4f07 FADStyrene monooxygenase component 2 / 0.654
1cqx FADFlavohemoprotein / 0.653
2byc FMNBlue-light receptor of the BLUF-family / 0.651
4yjd FADD-amino-acid oxidase 1.4.3.3 0.651
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.650