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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1s9p DES Estrogen-related receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1s9p DESEstrogen-related receptor gamma / 1.193
3erd DESEstrogen receptor / 0.775
4zn7 DESEstrogen receptor / 0.756
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1zaf 789Estrogen receptor beta / 0.716
1s9q OHTEstrogen-related receptor gamma / 0.692
2p7z OHTEstrogen-related receptor gamma / 0.686
1yye 196Estrogen receptor beta / 0.685
4iv4 1GSEstrogen receptor / 0.682
2qgt EEDEstrogen receptor / 0.671
1x7j GENEstrogen receptor beta / 0.665
2gpu OHTEstrogen-related receptor gamma / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
4dma 0L8Estrogen receptor / 0.659