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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rt9 IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.897
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.846
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.790
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.772
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.761
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.724
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.722
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.721
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.704
2p4s DIHAGAP005945-PA / 0.697
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.690
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.690
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.689
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.676
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.675
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.668
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.661