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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1r89 CTP CCA-adding enzyme 2.7.7.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1r89 CTPCCA-adding enzyme 2.7.7.72 0.902
1r8b ATPCCA-adding enzyme 2.7.7.72 0.792
1r8c UTPCCA-adding enzyme 2.7.7.72 0.792
2q66 ATPPoly(A) polymerase 2.7.7.19 0.728
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.717
4xj3 GTPCyclic GMP-AMP synthase / 0.717
3lzj CTPDNA-directed DNA polymerase / 0.714
4dtj TTPDNA-directed DNA polymerase / 0.714
4u03 GTPCyclic GMP-AMP synthase / 0.713
4dtp DGTDNA-directed DNA polymerase / 0.712
4fjj TTPDNA-directed DNA polymerase / 0.711
4m42 ATPDNA-directed DNA polymerase / 0.711
4fj5 DTPDNA-directed DNA polymerase / 0.710
2q0c CTPPoly(A) polymerase, putative / 0.698
3au2 DGTDNA polymerase beta family (X family) / 0.698
4dtx TTPDNA-directed DNA polymerase / 0.697
3ne6 DCPDNA-directed DNA polymerase / 0.695
4fjh DGTDNA-directed DNA polymerase / 0.695
4fjm DCPDNA-directed DNA polymerase / 0.695
4fk4 DGTDNA-directed DNA polymerase / 0.695
2zh6 ATPCCA-adding enzyme 2.7.7.72 0.687
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.683
4fjl DGTDNA-directed DNA polymerase / 0.683
4m3t ATPDNA-directed DNA polymerase / 0.683
3hiy UTPUncharacterized protein / 0.680
3q23 G2PVirion DNA-directed RNA polymerase / 0.679
3sup DCPDNA-directed DNA polymerase / 0.677
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.675
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.673
4u0m GTPCyclic GMP-AMP synthase / 0.673
4xj4 3ATCyclic GMP-AMP synthase / 0.671
2dra ATPCCA-adding enzyme 2.7.7.72 0.668
3ov7 ATPCCA-adding enzyme 2.7.7.72 0.668
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.665
1fa0 3ATPoly(A) polymerase 2.7.7.19 0.663
1cjv DADAdenylate cyclase type 2 / 0.661
1cjv DADAdenylate cyclase type 5 / 0.661
4ceg ADPAurora kinase A 2.7.11.1 0.660
4khy TTPDNA-directed DNA polymerase / 0.658
4dee ADPAurora kinase A 2.7.11.1 0.656
3akl ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.655
3ova APCCCA-adding enzyme 2.7.7.72 0.655
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.655
4ork GDPBifunctional AAC/APH 2.3.1 0.651