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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1que FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1que FADFerredoxin--NADP reductase 1.18.1.2 1.353
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.325
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.321
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.294
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.266
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.263
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.261
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.255
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.254
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.253
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.251
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.249
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.248
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.243
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.240
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.237
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.235
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.234
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.234
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.222
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.218
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.217
3vo2 FADFerredoxin--NADP reductase / 1.217
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.211
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.209
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.207
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.198
1gaw FADFerredoxin / 1.183
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.178
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.174
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.168
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.168
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.151
3w5u FADFerredoxin / 1.151
2rc6 FADFerredoxin--NADP reductase / 1.137
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.101
2rc5 FADFerredoxin--NADP reductase / 1.099
1sm4 FADFerredoxin--NADP reductase / 1.083
3qfs FADNADPH--cytochrome P450 reductase / 1.074
1gaq FADFerredoxin / 1.070
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.042
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.041
4yaf FADNADPH--cytochrome P450 reductase / 1.029
3ojw FADNADPH--cytochrome P450 reductase / 1.008
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.995
3qe2 FADNADPH--cytochrome P450 reductase / 0.992
3qfc FADNADPH--cytochrome P450 reductase / 0.992
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.982
1ja1 FADNADPH--cytochrome P450 reductase / 0.979
3qft FADNADPH--cytochrome P450 reductase / 0.975
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.964
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.962
1tll FADNitric oxide synthase, brain 1.14.13.39 0.961
4yau FADNADPH--cytochrome P450 reductase / 0.929
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.927
4y9u FADNADPH--cytochrome P450 reductase / 0.924
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.913
4y7c FADNADPH--cytochrome P450 reductase / 0.910
3qfr FADNADPH--cytochrome P450 reductase / 0.903
1ja0 FADNADPH--cytochrome P450 reductase / 0.902
1cqx FADFlavohemoprotein / 0.900
4y9r FADNADPH--cytochrome P450 reductase / 0.898
1j9z FADNADPH--cytochrome P450 reductase / 0.886
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.884
3fpk FADFerredoxin-NADP reductase / 0.868
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.868
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.866
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.849
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.843
3ojx FADNADPH--cytochrome P450 reductase / 0.843
1amo FADNADPH--cytochrome P450 reductase / 0.823
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.821
4yao FADNADPH--cytochrome P450 reductase / 0.820
2bf4 FADNADPH--cytochrome P450 reductase / 0.811
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.810
1gvh FADFlavohemoprotein / 0.807
2bpo FADNADPH--cytochrome P450 reductase / 0.803
2eix FADNADH-cytochrome b5 reductase / 0.798
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.798
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.780
2pia FMNPhthalate dioxygenase reductase / 0.777
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.772
2gpj FADSiderophore-interacting protein / 0.748
4fk8 FADFerredoxin--NADP reductase / 0.745
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.744
2bn4 FADNADPH--cytochrome P450 reductase / 0.741
2ptf FMNUncharacterized protein MTH_863 / 0.728
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.720
4k1x FADNADPH:ferredoxin reductase / 0.707
3in6 FMNUncharacterized protein / 0.695
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.694
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.691
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
1a8p FADFerredoxin--NADP reductase / 0.688
5j60 FADThioredoxin reductase / 0.686
3q9t FAYUncharacterized protein / 0.685
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.680
3pl8 FADPyranose 2-oxidase / 0.679
4hsu FADLysine-specific histone demethylase 1B 1 0.677
3t37 FADPyridoxine 4-oxidase / 0.673
4eep FMNPhototropin-2 2.7.11.1 0.672
2y48 FADLysine-specific histone demethylase 1A 1 0.671
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.668
1v5e FADPyruvate oxidase / 0.667
3r5z F42Uncharacterized protein / 0.667
2yg6 FADPutrescine oxidase / 0.666
3lsh FADPyranose 2-oxidase / 0.662
3rha FDAPutrescine oxidase / 0.662
2z6c FMNPhototropin-1 2.7.11.1 0.657
3lsi FADPyranose 2-oxidase / 0.657
1h83 FADPolyamine oxidase 1.5.3.14 0.655
2bgj FADNADPH:ferredoxin reductase / 0.655
3a20 FMNFMN-binding protein / 0.655
2h94 FADLysine-specific histone demethylase 1A 1 0.653
3v76 FDAUncharacterized protein / 0.653
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.653
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.652
2gv8 FADThiol-specific monooxygenase 1.14.13 0.651
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.650
3e4v FMNUncharacterized protein / 0.650