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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pz0 NAP Protein IolS 1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pz0 NAPProtein IolS 1.1.1 1.010
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.705
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.703
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.698
1ye6 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.697
4l1x NAPAldo-keto reductase family 1 member C2 / 0.697
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.694
1s1p NAPAldo-keto reductase family 1 member C3 / 0.692
1z9a NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.689
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.685
3ln3 NADAldo-keto reductase family 1 member C13 / 0.683
4jtq NAPAldo-keto reductase family 1 member C2 / 0.680
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.677
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.676
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.676
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.674
1s1r NAPAldo-keto reductase family 1 member C3 / 0.671
3qkz NAPAldose reductase-related protein 1 1.1.1.21 0.670
2vdg NDPAldose reductase 1.1.1.21 0.669
2pfh NDPAldose reductase 1.1.1.21 0.660
4pmj NAPPutative oxidoreductase / 0.659
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.657
2hdj NDPAldo-keto reductase family 1 member C2 / 0.653
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.652