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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pl1 ABY Glutathione S-transferase A1 2.5.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pl1 ABYGlutathione S-transferase A1 2.5.1.18 1.260
1pl2 ABYGlutathione S-transferase A1 2.5.1.18 1.148
3l0h GTXGlutathione S-transferase A1 2.5.1.18 0.940
2r3x GTXGlutathione S-transferase A1 2.5.1.18 0.924
1k3l GTXGlutathione S-transferase A1 2.5.1.18 0.911
2r6k GTXGlutathione S-transferase A1 2.5.1.18 0.856
1k3y GTXGlutathione S-transferase A1 2.5.1.18 0.855
1guh GSBGlutathione S-transferase A1 2.5.1.18 0.826
3ktl GTXGlutathione S-transferase A1 2.5.1.18 0.823
4hj2 LZ6Glutathione S-transferase A1 2.5.1.18 0.768
1aqv 0HGGlutathione S-transferase P 2.5.1.18 0.755
2pgt GPRGlutathione S-transferase P 2.5.1.18 0.744
2a2s GSNGlutathione S-transferase P 2.5.1.18 0.739
1vf2 GTXGlutathione S-transferase 3 2.5.1.18 0.724
3o76 GTBGlutathione S-transferase P 1 2.5.1.18 0.716
1vf3 GDNGlutathione S-transferase 3 2.5.1.18 0.708
4pgt GBXGlutathione S-transferase P 2.5.1.18 0.702
3ik7 BOBGlutathione S-transferase A4 2.5.1.18 0.700
2oad GTBGlutathione S-transferase P 1 2.5.1.18 0.695
2oac GTBGlutathione S-transferase P 1 2.5.1.18 0.679
2imk GTXAGAP009194-PA / 0.672
1bx9 GLY_GGL_FOEGlutathione S-transferase F2 2.5.1.18 0.670
3frc 0HGGlutathione S-transferase 2.5.1.18 0.662
2gsq GBIGlutathione S-transferase 2.5.1.18 0.657