2.600 Å
X-ray
1998-10-14
Name: | Glutathione S-transferase F2 |
---|---|
ID: | GSTF2_ARATH |
AC: | P46422 |
Organism: | Arabidopsis thaliana |
Reign: | Eukaryota |
TaxID: | 3702 |
EC Number: | 2.5.1.18 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.987 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.049 | 398.250 |
% Hydrophobic | % Polar |
---|---|
59.32 | 40.68 |
According to VolSite |
HET Code: | GLY_GGL_FOE |
---|---|
Formula: | C21H28FN4O7S |
Molecular weight: | 499.533 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 45.06 % |
Polar Surface area: | 211.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 14 |
X | Y | Z |
---|---|---|
16.8038 | 30.3884 | 21.4741 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1 | CB | SER- 10 | 3.93 | 0 | Hydrophobic |
CB | CB | SER- 10 | 4.07 | 0 | Hydrophobic |
O3 | N | ILE- 11 | 3.35 | 151.47 | H-Bond (Protein Donor) |
C7 | CD1 | ILE- 11 | 3.82 | 0 | Hydrophobic |
CG | CB | ALA- 12 | 3.95 | 0 | Hydrophobic |
O | NZ | LYS- 40 | 3.35 | 0 | Ionic (Protein Cationic) |
CG | CB | GLN- 52 | 4.2 | 0 | Hydrophobic |
N | O | VAL- 53 | 2.85 | 129.22 | H-Bond (Ligand Donor) |
O | N | VAL- 53 | 2.78 | 163.97 | H-Bond (Protein Donor) |
CB | CG2 | VAL- 53 | 3.6 | 0 | Hydrophobic |
N | OE2 | GLU- 65 | 3.05 | 0 | Ionic (Ligand Cationic) |
O | N | SER- 66 | 2.99 | 165.88 | H-Bond (Protein Donor) |
OXT | OG | SER- 66 | 2.63 | 151.04 | H-Bond (Protein Donor) |
OXT | NH1 | ARG- 67 | 3.36 | 125.77 | H-Bond (Protein Donor) |
C7 | CB | SER- 114 | 4.18 | 0 | Hydrophobic |
C5 | CB | PHE- 118 | 4.35 | 0 | Hydrophobic |
C5 | CZ | PHE- 122 | 3.31 | 0 | Hydrophobic |
O | O | HOH- 253 | 3.08 | 160.28 | H-Bond (Protein Donor) |