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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1p8d CO1 Oxysterols receptor LXR-beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1p8d CO1Oxysterols receptor LXR-beta / 1.234
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.705
4pxm ESTEstrogen receptor / 0.705
4bqu CLRJapanin / 0.698
2abi 1CAMineralocorticoid receptor / 0.685
2yja ESTEstrogen receptor / 0.685
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.682
2aax PDNMineralocorticoid receptor / 0.680
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.677
1y9r 1CAMineralocorticoid receptor / 0.676
2g5o DRQEstrogen receptor / 0.668
5hyr ESTEstrogen receptor / 0.667
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.665
1g50 ESTEstrogen receptor / 0.662
3oll ESTEstrogen receptor beta / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4q0a 4OAVitamin D3 receptor A / 0.660
1zhz ERGOxysterol-binding protein homolog 4 / 0.657
2oax SNLMineralocorticoid receptor / 0.654
3w5r LOAVitamin D3 receptor / 0.652
1t5z DHTAndrogen receptor / 0.651
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 0.651
4j26 ESTEstrogen receptor beta / 0.651