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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1oyt FSN Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1oyt FSNProthrombin 3.4.21.5 1.018
1vzq SHYProthrombin 3.4.21.5 0.931
2cn0 F25Prothrombin 3.4.21.5 0.907
1ype UIPProthrombin 3.4.21.5 0.883
2cf8 ESHProthrombin 3.4.21.5 0.856
2cf9 348Prothrombin 3.4.21.5 0.833
1ypj UIBProthrombin 3.4.21.5 0.824
1ypg UIRProthrombin 3.4.21.5 0.808
1kts C24Prothrombin 3.4.21.5 0.770
2bok 784Coagulation factor X 3.4.21.6 0.758
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2znk 31UProthrombin 3.4.21.5 0.740
3plp BBACationic trypsin 3.4.21.4 0.739
2zfr 46UProthrombin 3.4.21.5 0.730
4e7r 0NWProthrombin 3.4.21.5 0.727
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.722
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.722
1ypm RA4Prothrombin 3.4.21.5 0.721
4ax9 N5NProthrombin 3.4.21.5 0.720
2zda 32UProthrombin 3.4.21.5 0.718
1d4p BPPProthrombin 3.4.21.5 0.716
1o5g CR9Prothrombin 3.4.21.5 0.706
2gde SN3Prothrombin 3.4.21.5 0.704
2zi2 24UProthrombin 3.4.21.5 0.704
1ghv 120Prothrombin 3.4.21.5 0.703
4ayy 9MXProthrombin 3.4.21.5 0.703
4bak M67Prothrombin 3.4.21.5 0.703
2ziq 26UProthrombin 3.4.21.5 0.700
1nzq 162Prothrombin 3.4.21.5 0.694
1ypk CCRProthrombin 3.4.21.5 0.693
5cmx 0G6Prothrombin 3.4.21.5 0.692
2bdy UNBProthrombin 3.4.21.5 0.691
1o2g 696Prothrombin 3.4.21.5 0.688
2zhw 12UProthrombin 3.4.21.5 0.686
3biu 10UProthrombin 3.4.21.5 0.685
2zhe 13UProthrombin 3.4.21.5 0.684
4baq M4ZProthrombin 3.4.21.5 0.684
3biv 11UProthrombin 3.4.21.5 0.679
1c4u IH1Prothrombin 3.4.21.5 0.678
1riw OSCProthrombin 3.4.21.5 0.678
1gj5 130Prothrombin 3.4.21.5 0.677
1ae8 AZLProthrombin 3.4.21.5 0.674
1lpk CBBCoagulation factor X 3.4.21.6 0.673
1wtg 3BPCoagulation factor VII 3.4.21.21 0.672
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.670
1gj4 132Prothrombin 3.4.21.5 0.664
4bam MM9Prothrombin 3.4.21.5 0.664
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.663
1o0d 163Prothrombin 3.4.21.5 0.663
4az2 9MUProthrombin 3.4.21.5 0.662
4ban M6SProthrombin 3.4.21.5 0.662
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.661
3utu 1TSProthrombin 3.4.21.5 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2zg0 50UProthrombin 3.4.21.5 0.657
4ayv 9MQProthrombin 3.4.21.5 0.651