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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ofv FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ofv FMNFlavodoxin / 1.226
1czn FMNFlavodoxin / 1.222
2v5u FMNFlavodoxin / 1.119
3esz FMNFlavodoxin / 1.041
3esy FMNFlavodoxin / 0.959
1ahn FMNFlavodoxin 1 / 0.947
1j8q FMNFlavodoxin / 0.936
1azl FMNFlavodoxin / 0.927
2fx2 FMNFlavodoxin / 0.912
1wsb FMNFlavodoxin / 0.903
2v5v FMNFlavodoxin / 0.903
1akr FMNFlavodoxin / 0.897
1akw FMNFlavodoxin / 0.881
2fcr FMNFlavodoxin / 0.870
1yob FMNFlavodoxin 2 / 0.849
3f6s FMNFlavodoxin / 0.847
5xra FMNCannabinoid receptor 1 / 0.839
5tgz FMNCannabinoid receptor 1 / 0.831
1fx1 FMNFlavodoxin / 0.822
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.817
4oxx FMNCindoxin / 0.803
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.800
2bf4 FMNNADPH--cytochrome P450 reductase / 0.796
1amo FMNNADPH--cytochrome P450 reductase / 0.786
2mok FMNFlavodoxin 1 / 0.780
4fx2 FMNFlavodoxin / 0.777
4yao FMNNADPH--cytochrome P450 reductase / 0.777
1c7f FMNFlavodoxin / 0.770
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.767
1j9g FMNFlavodoxin / 0.762
1xyy FMNFlavodoxin / 0.762
1aku FMNFlavodoxin / 0.760
2bn4 FMNNADPH--cytochrome P450 reductase / 0.757
1ja0 FMNNADPH--cytochrome P450 reductase / 0.756
3qe2 FMNNADPH--cytochrome P450 reductase / 0.748
3qfr FMNNADPH--cytochrome P450 reductase / 0.745
5xr8 FMNCannabinoid receptor 1 / 0.742
4y7c FMNNADPH--cytochrome P450 reductase / 0.738
3n39 FMNProtein NrdI / 0.737
2ohh FMNType A flavoprotein FprA 1 0.732
4bmp FMNProtein NrdI / 0.729
3ojw FMNNADPH--cytochrome P450 reductase / 0.724
3ojx FMNNADPH--cytochrome P450 reductase / 0.719
2q9u FMNA-type flavoprotein / 0.718
3f90 FMNFlavodoxin / 0.718
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.714
4bmo FMNProtein NrdI / 0.712
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.712
1ych FMNNitric oxide reductase 1 0.707
5fx2 FMNFlavodoxin / 0.706
1xyv FMNFlavodoxin / 0.705
2ohj FMNType A flavoprotein FprA 1 0.703
3klb FMNUncharacterized protein / 0.700
3n3a FMNProtein NrdI / 0.698
1fue FMNFlavodoxin / 0.694
1ycf FMNNitric oxide reductase 1 0.693
2ohi FMNType A flavoprotein FprA 1 0.693
4j8p FMNFlavodoxin / 0.692
3f6r FMNFlavodoxin / 0.689
3n3b FMNProtein NrdI / 0.688
3kap FMNFlavodoxin / 0.686
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.683
2w5u FMNFlavodoxin / 0.680
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.674
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.674
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.674
1ycg FMNNitric oxide reductase 1 0.672
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.672
3hji FADVivid PAS protein VVD / 0.672
1t5b FMNFMN-dependent NADH-azoreductase / 0.671
2fre FMNNAD(P)H-flavin oxidoreductase / 0.669
1j9z FMNNADPH--cytochrome P450 reductase / 0.668
3lcm FADPutative oxidoreductase / 0.668
2b3d FADModulator of drug activity B / 0.667
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.665
2dvl FADAcyl-CoA dehydrogenase / 0.662
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.662
1ja1 FMNNADPH--cytochrome P450 reductase / 0.661
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.661
4yco FMNtRNA-dihydrouridine(16) synthase / 0.661
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.660
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.660
3oix FMNDihydroorotate dehydrogenase / 0.660
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.657
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.654
2d29 FADAcyl-CoA dehydrogenase / 0.654
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.654
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.653
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
1bu5 RBFFlavodoxin / 0.650
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.650
1z48 FMNNADPH dehydrogenase / 0.650