sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1o8c | NDP | Probable acrylyl-CoA reductase AcuI | 1.3.1.84 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1o8c | NDP | Probable acrylyl-CoA reductase AcuI | 1.3.1.84 | 1.277 | |
| 3nx4 | NAP | Putative oxidoreductase | / | 0.910 | |
| 4oaq | NDP | R-specific carbonyl reductase | / | 0.778 | |
| 1yqd | NAP | Sinapyl alcohol dehydrogenase | / | 0.770 | |
| 4xyb | NDP | Formate dehydrogenase | / | 0.756 | |
| 3jyn | NDP | Quinone oxidoreductase | / | 0.739 | |
| 4jbi | NDP | Alcohol dehydrogenase (Zinc) | / | 0.725 | |
| 5doz | NDP | JamJ | / | 0.721 | |
| 2nnl | NAP | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.718 | |
| 3two | NDP | Mannitol dehydrogenase | / | 0.714 | |
| 1h2b | NAJ | NAD-dependent alcohol dehydrogenase | / | 0.705 | |
| 1r37 | NAD | NAD-dependent alcohol dehydrogenase | 1.1.1.1 | 0.703 | |
| 4y1b | NAP | AntE | / | 0.699 | |
| 4ejm | NAP | Putative zinc-binding dehydrogenase | / | 0.698 | |
| 2c0c | NAP | Prostaglandin reductase 3 | 1 | 0.695 | |
| 4gkv | NAD | Alcohol dehydrogenase, propanol-preferring | 1.1.1.1 | 0.695 | |
| 2yjz | NAP | Metalloreductase STEAP4 | 1.16.1 | 0.694 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.692 | |
| 1uxj | NAD | Malate dehydrogenase | / | 0.691 | |
| 3cos | NAD | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.690 | |
| 3wyc | NAP | Meso-diaminopimelate D-dehydrogenase | 1.4.1.16 | 0.685 | |
| 5kje | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.685 | |
| 4c4o | NAD | SADH | / | 0.684 | |
| 5kj6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.683 | |
| 4rvu | NDP | Probable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein) | / | 0.682 | |
| 2ekl | NAD | D-3-phosphoglycerate dehydrogenase | / | 0.681 | |
| 1wze | NAD | Malate dehydrogenase | / | 0.680 | |
| 4w6z | 8ID | Alcohol dehydrogenase 1 | 1.1.1.1 | 0.677 | |
| 4i1i | NAD | Malate dehydrogenase | / | 0.676 | |
| 1yqx | NAP | Sinapyl alcohol dehydrogenase | / | 0.675 | |
| 1hld | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.672 | |
| 1piw | NAP | NADP-dependent alcohol dehydrogenase 6 | 1.1.1.2 | 0.672 | |
| 2qx7 | NAP | Eugenol synthase 1 | 1.1.1.318 | 0.672 | |
| 3wle | NAD | (R)-specific carbonyl reductase | / | 0.672 | |
| 3oq6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.671 | |
| 5kcz | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.671 | |
| 4dxh | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.670 | |
| 4gi2 | NAP | Crotonyl-CoA carboxylase/reductase | / | 0.670 | |
| 3wbb | NAP | Meso-diaminopimelate D-dehydrogenase | / | 0.669 | |
| 5kj1 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.669 | |
| 1pjc | NAD | Alanine dehydrogenase | / | 0.668 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.668 | |
| 3qwb | NDP | Probable quinone oxidoreductase | 1.6.5.5 | 0.668 | |
| 4nd4 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.668 | |
| 2dfd | NAD | Malate dehydrogenase, mitochondrial | 1.1.1.37 | 0.667 | |
| 3wsw | NAD | L-lactate dehydrogenase | / | 0.665 | |
| 4b7x | NAP | Probable oxidoreductase | / | 0.663 | |
| 4xqc | NAD | Homospermidine synthase | 2.5.1.44 | 0.663 | |
| 1t2c | NAI | L-lactate dehydrogenase | 1.1.1.27 | 0.662 | |
| 1qor | NDP | Quinone oxidoreductase 1 | / | 0.661 | |
| 4xq9 | NAD | Homospermidine synthase | 2.5.1.44 | 0.661 | |
| 4xrg | NAD | Homospermidine synthase | 2.5.1.44 | 0.661 | |
| 1mb4 | NDP | Aspartate-semialdehyde dehydrogenase 1 | / | 0.660 | |
| 2dbq | NAP | Glyoxylate reductase | 1.1.1.26 | 0.660 | |
| 3rku | NAP | NADP-dependent 3-hydroxy acid dehydrogenase | / | 0.659 | |
| 5dt9 | NAD | Erythronate-4-phosphate dehydrogenase | / | 0.658 | |
| 5a05 | NDP | Glucose-fructose oxidoreductase | / | 0.657 | |
| 1h6a | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.656 | |
| 1p0f | NAP | NADP-dependent alcohol dehydrogenase | 1.1.1.2 | 0.656 | |
| 1lld | NAD | L-lactate dehydrogenase 2 | 1.1.1.27 | 0.655 | |
| 3n7u | NAD | Formate dehydrogenase, chloroplastic/mitochondrial | / | 0.655 | |
| 4y0k | NAP | AntE | / | 0.655 | |
| 5a1t | NAI | L-lactate dehydrogenase | / | 0.654 | |
| 1cf2 | NAP | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.653 | |
| 1uxk | NAD | Malate dehydrogenase | / | 0.653 | |
| 1zh8 | NAP | Uncharacterized protein | / | 0.653 | |
| 4e5p | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.653 | |
| 3tn7 | NJP | Short-chain alcohol dehydrogenase | / | 0.652 | |
| 3wbf | NAP | Meso-diaminopimelate D-dehydrogenase | / | 0.652 | |
| 1ie3 | NAD | Malate dehydrogenase | / | 0.651 | |
| 2dbz | NAP | Glyoxylate reductase | 1.1.1.26 | 0.651 | |
| 2q1u | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.651 | |
| 6adh | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.651 | |
| 1u31 | NDP | NAD(P) transhydrogenase, mitochondrial | 1.6.1.2 | 0.650 | |
| 2c59 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.650 | |
| 2ldb | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.650 |