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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m9j CLW Nitric oxide synthase, endothelial 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m9j CLWNitric oxide synthase, endothelial 1.14.13.39 0.795
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.696
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.692
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.690
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.690
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.688
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.685
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.684
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.682
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.682
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.680
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.676
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.668
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.665
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.664
1m9m 6NINitric oxide synthase, endothelial 1.14.13.39 0.653
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.652
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.651