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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m8d H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.763
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.717
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.712
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.710
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.708
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.689
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.683
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.683
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.678
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.673
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.671
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.661
3o8g O8GHTH-type transcriptional regulator EthR / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.657
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.657
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.656
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.656
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.656
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.656
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.655
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.655
4a86 H35Major pollen allergen Bet v 1-A / 0.655
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.655
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.654
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.654
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.654
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.653
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.653
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.652
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.652
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.652
1uma IN2Prothrombin 3.4.21.5 0.651
4b0j 3MQ3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase 4.2.1.59 0.650