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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lon IMO Adenylosuccinate synthetase isozyme 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lon IMOAdenylosuccinate synthetase isozyme 1 / 1.188
1p9b IMOAdenylosuccinate synthetase / 1.108
1lny IMOAdenylosuccinate synthetase isozyme 1 / 1.085
1cg3 IMOAdenylosuccinate synthetase / 1.024
1cg0 IMOAdenylosuccinate synthetase / 0.998
2gcq DOIAdenylosuccinate synthetase / 0.983
2dgn DOIAdenylosuccinate synthetase isozyme 1 / 0.932
1cg1 IMOAdenylosuccinate synthetase / 0.923
1ksz PGSAdenylosuccinate synthetase / 0.868
1cg4 IMOAdenylosuccinate synthetase / 0.843
1qf4 RPDAdenylosuccinate synthetase / 0.800
1nht PGSAdenylosuccinate synthetase / 0.784
1qf5 RPLAdenylosuccinate synthetase / 0.780
2y65 ADPKinesin heavy chain / 0.664