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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k2s H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.889
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.876
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.873
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.871
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.871
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.867
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.866
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.865
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.864
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.860
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.859
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.859
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.858
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.858
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.858
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.857
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.857
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.857
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.857
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.857
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.857
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.856
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.855
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.855
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.855
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.854
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.854
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.854
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.853
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.853
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.850
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.849
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.849
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.848
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.847
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.845
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.842
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.842
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.840
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.840
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.840
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.840
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.840
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.839
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.837
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.837
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.837
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.836
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.835
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.835
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.832
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.828
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.825
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.823
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.822
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.821
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.821
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.821
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.821
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.820
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.820
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.818
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.818
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.817
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.815
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.814
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.813
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.810
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.810
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.808
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.806
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.806
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.805
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.805
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.804
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.803
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.803
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.802
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.801
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.799
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.799
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.798
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.797
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.793
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.789
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.787
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.782
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.778
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.777
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.772
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.771
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.765
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.759
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.757
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.756
3png H4BNitric oxide synthase, brain 1.14.13.39 0.747
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.736
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.725
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.723
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.709
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.695
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.690
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.690
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.683
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.676
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.667
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.666
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.657
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.656