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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1j1z ATP Argininosuccinate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1j1z ATPArgininosuccinate synthase / 1.008
1j21 ATPArgininosuccinate synthase / 0.875
1kh2 ATPArgininosuccinate synthase / 0.835
1kor ANPArgininosuccinate synthase / 0.803
1kh3 ANPArgininosuccinate synthase / 0.768
1kp2 ATPArgininosuccinate synthase 6.3.4.5 0.722
1kp3 ATPArgininosuccinate synthase 6.3.4.5 0.705
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.692
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.691
1s16 ANPDNA topoisomerase 4 subunit B / 0.688
2npn SAMPutative cobalamin synthesis related protein / 0.687
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.686
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.685
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.684
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.680
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.678
3rk1 ATPN-type ATP pyrophosphatase superfamily / 0.675
2owu SAHDiphthine synthase / 0.673
2huv SAHDiphthine synthase / 0.672
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.671
2z08 ATPUniversal stress protein family / 0.669
3tw6 ADPPyruvate carboxylase / 0.664
4prx ADPDNA gyrase subunit B / 0.663
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.662
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.662
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.660
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.660
4cnf MTASpoU rRNA methylase / 0.658
1mjh ATPUniversal stress protein MJ0577 / 0.657
2egl SAHDiphthine synthase / 0.656
4xfj ANPArgininosuccinate synthase / 0.656
5ahw CMPUniversal stress protein family protein, putative / 0.655
3o7b SAHRibosomal RNA small subunit methyltransferase Nep1 / 0.654
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 0.654
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.652
4x3l MTARNA 2'-O ribose methyltransferase / 0.652
2z0y SAMRibosomal RNA small subunit methyltransferase E / 0.651
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.651
3s3t ATPUniversal stress protein / 0.651