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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hsk FAD UDP-N-acetylenolpyruvoylglucosamine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.411
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.122
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.075
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.051
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.039
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.953
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.951
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.925
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.919
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.911
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.879
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.864
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.838
3pm9 FADPutative oxidoreductase / 0.826
4ysw FADXanthine dehydrogenase/oxidase / 0.819
1wyg FADXanthine dehydrogenase/oxidase / 0.804
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.743
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.741
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.738
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.716
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.685
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.683
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.681
4eep FMNPhototropin-2 2.7.11.1 0.672
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.665
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.664
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.664
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
3h0l ADPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.658
3zl8 ADPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.655
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.654
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650