Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g0r THM Glucose-1-phosphate thymidylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g0r THMGlucose-1-phosphate thymidylyltransferase / 0.862
1fxo TMPGlucose-1-phosphate thymidylyltransferase / 0.811
1g2v TTPGlucose-1-phosphate thymidylyltransferase / 0.799
4ho8 THMGlucose-1-phosphate thymidylyltransferase / 0.770
5ify UMPGlucose-1-phosphate thymidylyltransferase / 0.769
4ho4 THMGlucose-1-phosphate thymidylyltransferase / 0.749
1h5t TYDGlucose-1-phosphate thymidylyltransferase 1 / 0.715
5fuw THMThymidine kinase, putative / 0.698
5fuv THMThymidine kinase, putative / 0.688
4ho6 UTPGlucose-1-phosphate thymidylyltransferase / 0.683
1e2j THMThymidine kinase / 0.660
2vp0 TTPDeoxynucleoside kinase / 0.657
3gg2 UGASugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family / 0.656
1xbt TTPThymidine kinase, cytosolic 2.7.1.21 0.650