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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fm4 DXC Major pollen allergen Bet v 1-L

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fm4 DXCMajor pollen allergen Bet v 1-L / 1.078
4a84 DXCMajor pollen allergen Bet v 1-A / 0.863
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.694
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 0.683
2ft9 CHDFatty acid-binding protein 2, liver / 0.680
2jn3 JN3Fatty acid-binding protein, liver / 0.675
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.669
3w5p 4OAVitamin D3 receptor / 0.668
1o1v TCHGastrotropin / 0.664
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.663
4udc DEXGlucocorticoid receptor / 0.658
3s79 ASDAromatase 1.14.14.14 0.656
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.654
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.651
1lhn AONSex hormone-binding globulin / 0.650
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.650