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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1flm FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1flm FMNFMN-binding protein / 1.081
3a6q FMNFMN-binding protein / 1.047
3a6r FMNFMN-binding protein / 1.044
3vy2 FMNFMN-binding protein / 1.028
2e83 FMNFMN-binding protein / 1.018
1wli FMNFMN-binding protein / 1.011
3vy5 FMNFMN-binding protein / 1.010
3awh FMNFMN-binding protein / 1.007
1wlk FMNFMN-binding protein / 0.994
3a20 FMNFMN-binding protein / 0.990
3amf FMNFMN-binding protein / 0.987
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.706
2vnj FADNADPH:ferredoxin reductase / 0.694
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.687
1cqx FADFlavohemoprotein / 0.686
3e4v FMNUncharacterized protein / 0.682
2rc5 FADFerredoxin--NADP reductase / 0.679
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.676
2bf4 FADNADPH--cytochrome P450 reductase / 0.676
2pia FMNPhthalate dioxygenase reductase / 0.676
4y7c FADNADPH--cytochrome P450 reductase / 0.675
4yao FADNADPH--cytochrome P450 reductase / 0.675
2vnh FADNADPH:ferredoxin reductase / 0.674
2bgj FADNADPH:ferredoxin reductase / 0.673
4fk8 FADFerredoxin--NADP reductase / 0.673
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.670
1usc FMNMonooxygenase / 0.669
3qe2 FADNADPH--cytochrome P450 reductase / 0.666
2dji FADPyruvate oxidase / 0.665
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.664
4yau FADNADPH--cytochrome P450 reductase / 0.662
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.662
2vnk FADNADPH:ferredoxin reductase / 0.660
4y9u FADNADPH--cytochrome P450 reductase / 0.660
2bn4 FADNADPH--cytochrome P450 reductase / 0.659
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.659
3r5y F42Uncharacterized protein / 0.659
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.658
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.657
2eix FADNADH-cytochrome b5 reductase / 0.656
3ojw FADNADPH--cytochrome P450 reductase / 0.655
1v5e FADPyruvate oxidase / 0.653
3r5z F42Uncharacterized protein / 0.652
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.651
4h6r FDAProline dehydrogenase / 0.650