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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d7o TCL Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d7o TCLEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.934
3nrc TCLEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.763
3f4b TCLEnoyl-acyl carrier protein reductase / 0.759
1nhg TCLEnoyl-ACP reductase / 0.752
1uh5 TCLEnoyl-ACP reductase / 0.749
2o2s TCLEnoyl-acyl carrier reductase / 0.746
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1zxl JP1Enoyl-ACP reductase / 0.735
1zw1 TN5Enoyl-ACP reductase / 0.716
4igf CHVEnoyl-acyl carrier reductase / 0.714
3am3 TCLEnoyl-ACP reductase / 0.706
3nj8 NJ8Enoyl-acyl carrier reductase / 0.705
4ige CHJEnoyl-acyl carrier reductase / 0.700
3fnh JPJEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
2b35 TCLEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1nhw TCCEnoyl-ACP reductase / 0.659
2op1 8PCEnoyl-ACP reductase / 0.658
1zsn TN2Enoyl-ACP reductase / 0.655