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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1czn FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1czn FMNFlavodoxin / 1.230
1ofv FMNFlavodoxin / 1.222
2v5u FMNFlavodoxin / 1.128
3esz FMNFlavodoxin / 1.056
1j8q FMNFlavodoxin / 0.964
1azl FMNFlavodoxin / 0.940
1akr FMNFlavodoxin / 0.924
1ahn FMNFlavodoxin 1 / 0.918
2v5v FMNFlavodoxin / 0.915
2fx2 FMNFlavodoxin / 0.914
1wsb FMNFlavodoxin / 0.909
1akw FMNFlavodoxin / 0.899
3f6s FMNFlavodoxin / 0.889
3esy FMNFlavodoxin / 0.881
5xra FMNCannabinoid receptor 1 / 0.864
1yob FMNFlavodoxin 2 / 0.851
2fcr FMNFlavodoxin / 0.851
1fx1 FMNFlavodoxin / 0.827
1xyv FMNFlavodoxin / 0.822
4fx2 FMNFlavodoxin / 0.804
1c7f FMNFlavodoxin / 0.794
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.789
4oxx FMNCindoxin / 0.789
3qfr FMNNADPH--cytochrome P450 reductase / 0.788
2bf4 FMNNADPH--cytochrome P450 reductase / 0.787
5tgz FMNCannabinoid receptor 1 / 0.786
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.779
5xr8 FMNCannabinoid receptor 1 / 0.778
1xyy FMNFlavodoxin / 0.777
1j9g FMNFlavodoxin / 0.773
2ohh FMNType A flavoprotein FprA 1 0.768
1aku FMNFlavodoxin / 0.763
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.763
4yao FMNNADPH--cytochrome P450 reductase / 0.762
2mok FMNFlavodoxin 1 / 0.755
3n39 FMNProtein NrdI / 0.751
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.749
1amo FMNNADPH--cytochrome P450 reductase / 0.748
3qe2 FMNNADPH--cytochrome P450 reductase / 0.748
4bmo FMNProtein NrdI / 0.741
2bn4 FMNNADPH--cytochrome P450 reductase / 0.737
3f90 FMNFlavodoxin / 0.734
5fx2 FMNFlavodoxin / 0.727
1ja0 FMNNADPH--cytochrome P450 reductase / 0.722
1fue FMNFlavodoxin / 0.721
4y7c FMNNADPH--cytochrome P450 reductase / 0.719
3ojw FMNNADPH--cytochrome P450 reductase / 0.717
1ych FMNNitric oxide reductase 1 0.712
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.711
3ojx FMNNADPH--cytochrome P450 reductase / 0.704
3kap FMNFlavodoxin / 0.702
2ohi FMNType A flavoprotein FprA 1 0.693
4ees FMNPhototropin-2 2.7.11.1 0.690
3f6r FMNFlavodoxin / 0.689
4j8p FMNFlavodoxin / 0.689
2q9u FMNA-type flavoprotein / 0.688
3kaq FMNFlavodoxin / 0.688
2ohj FMNType A flavoprotein FprA 1 0.687
1t5b FMNFMN-dependent NADH-azoreductase / 0.686
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.686
3n3a FMNProtein NrdI / 0.686
4bmp FMNProtein NrdI / 0.686
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.684
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.684
3n3b FMNProtein NrdI / 0.684
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.680
1ycf FMNNitric oxide reductase 1 0.677
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.677
1ja1 FMNNADPH--cytochrome P450 reductase / 0.670
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.670
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
3lcm FADPutative oxidoreductase / 0.667
1j9z FMNNADPH--cytochrome P450 reductase / 0.666
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.665
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.664
1ycg FMNNitric oxide reductase 1 0.662
2w5u FMNFlavodoxin / 0.662
3rpe FADPutative modulator of drug activity / 0.662
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.660
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.660
2d29 FADAcyl-CoA dehydrogenase / 0.658
2dvl FADAcyl-CoA dehydrogenase / 0.658
3hji FADVivid PAS protein VVD / 0.658
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.658
4ttc FMNIodotyrosine deiodinase 1 / 0.657
3klb FMNUncharacterized protein / 0.655
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.655
4tmb FMNOld yellow enzyme / 0.654
2mt9 FMNFlavodoxin 2 / 0.653
2iml FMNUncharacterized protein / 0.651
2wzv FMNNitroreductase NfnB / 0.651
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.651
4qai FMNNADPH dehydrogenase / 0.651
1bu5 RBFFlavodoxin / 0.650
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.650