sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 1.112 | |
| 1pua | COA | HAT A1 | / | 0.830 | |
| 1pu9 | COA | HAT A1 | / | 0.818 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.801 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.788 | |
| 1m1d | LYX | HAT A1 | / | 0.780 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.772 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.763 | |
| 1qsn | COA | HAT A1 | / | 0.762 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.755 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.752 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.752 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.751 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.747 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.744 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.742 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.740 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.738 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.737 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.734 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.733 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.731 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.724 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.721 | |
| 1qsr | ACO | HAT A1 | / | 0.721 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.718 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.717 | |
| 1m4d | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.716 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.715 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.715 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.713 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.712 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.712 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.706 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.703 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.703 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.700 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.698 | |
| 3s6f | COA | Uncharacterized protein | / | 0.698 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.697 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.697 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.694 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.691 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.690 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.690 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.689 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.688 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.687 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.687 | |
| 2bue | COA | AAC(6')-Ib | / | 0.686 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.683 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.681 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.679 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.677 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.676 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.671 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.670 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.670 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.669 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.666 | |
| 3r96 | ACO | MccE protein | / | 0.665 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.664 | |
| 2zw5 | COA | Bleomycin acetyltransferase | / | 0.661 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.658 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.658 | |
| 3r95 | ACO | MccE protein | / | 0.658 | |
| 4kub | COA | Uncharacterized protein | / | 0.658 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.657 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.657 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.654 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.654 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.654 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.653 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.651 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.650 |